PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g20830.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 440aa    MW: 48340.8 Da    PI: 6.7268
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g20830.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.22.5e-07344384954
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       r RR+ri +++  L++++P        K++ a++L +A +Y+k L
  Vradi05g20830.1 344 ARERRERISERIRVLQKIVPGG-----SKMDTASMLDEAANYLKFL 384
                      599*****************95.....5****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.665335384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-13340399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-12341390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-11343396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-4345384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.76E-4357389No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MDGLSWDSSS QLVGNIPILW SSQPQDLEGE YHHSMPHLCS NVHNQTCYPY HSSEKAREMV  60
HPSTSEITSI LPNMNLSQRT ATMPVKSGTV GASWGEALTS QSCPSLSVNM NQTSNYVADF  120
NMAHQQQHLI SGTQNVKATC SLESLDCLLS ATKNGNTDTS LEDDGISMMI LSDCRNLCNF  180
SYGSAVSSGE SESNASNARN SDMRYASVNE LDETASQSFS DQYISQGRVI DSEVICTKGS  240
NSCFSVAQNS FATEGGFRLI SETSPKSKRP RWNRHPGSSN INFQQPNSSV SPSFEEPDPE  300
AIAQMKEMIY RAAAFRPVNL GLEVVEKPKR KNVRISTDPQ TVAARERRER ISERIRVLQK  360
IVPGGSKMDT ASMLDEAANY LKFLRAQVKA LENLGNKLDT MNCPPNIAFS FNSSFPVQTH  420
FPVQNPSGNT HNQQSKGRK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014500448.10.0PREDICTED: transcription factor bHLH87-like
RefseqXP_014500449.10.0PREDICTED: transcription factor bHLH87-like
SwissprotQ8S3D22e-80BH087_ARATH; Transcription factor bHLH87
TrEMBLA0A0L9UNP10.0A0A0L9UNP1_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SFT20.0A0A0S3SFT2_PHAAN; Uncharacterized protein
STRINGGLYMA15G02531.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45303257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.14e-68bHLH family protein